This skill covers reproducible research pipelines and replication packages. Use when the user is setting up a research project directory structure, configuring workflow managers (Make, Snakemake, DVC), managing computational environments, preparing replication packages for journal submission, or debugging reproducibility failures. Triggers on "reproducible", "replication package", "Makefile", "Snakemake", "DVC", "pipeline", "workflow manager", "data versioning", "conda environment", "Docker", "seed management", "AEA data editor", "replication", "project structure", or "submission checklist".
Reproducible Pipelines Reference for building reproducible research pipelines: from project directory structure to automated workflows to journal ready replication packages. Every computational result should be regenerable from raw data by running a single command. When to Use This Skill Use when the user is: Setting up a new empirical research project Building or debugging a Makefile/Snakemake/DVC pipeline Preparing a replication package for journal submission Managing computational…
Full body not shown for this license – view the source on GitHub →Copy a source-pinned command for your client. You run it yourself.
Destination: .claude/skills/reproducible-pipelines · pinned to the source commit
# Run from your project root
git clone https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git .skillboard-tmp
git -C .skillboard-tmp checkout 692e9fa3fea40bbdf614584d461851f8fb968ac2
mkdir -p ".claude/skills"
cp -r ".skillboard-tmp/skills/11-James-Traina-compound-science/skills/reproducible-pipelines" ".claude/skills/"
rm -rf .skillboard-tmpReview the source before running. This copies files into your project; it is not a one-click install and does not verify runtime safety.
sudo apt update && sudo apt install -y gitnpm install -g @anthropic-ai/claude-code# Run from your project root
git clone https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git .skillboard-tmp
git -C .skillboard-tmp checkout 692e9fa3fea40bbdf614584d461851f8fb968ac2
mkdir -p ".claude/skills"
cp -r ".skillboard-tmp/skills/11-James-Traina-compound-science/skills/reproducible-pipelines" ".claude/skills/"
rm -rf .skillboard-tmpDestination: .claude/skills/reproducible-pipelines
Scanner static-checks@0.1.0 · commit 692e9fa3fea4. Static checks cannot prove runtime safety – review the source and the exact diff before installing. How checks work.
Contains commands that can irreversibly delete or overwrite data.
Evidence: rm -rf· fingerprint 3aa78388a06d8af1
Instructs shell/process/package operations that run commands on the host.
Evidence: pip install· fingerprint 7944ec554efca445