Cleans a Quarto (.qmd) file by replacing LaTeX holdovers with proper Quarto/Pandoc syntax so the document renders correctly to HTML, PDF (Typst/LaTeX), and Word. Fixes citations (\citep → [@key]), cross-references (\ref → @label), figures (\includegraphics → markdown), tables, text formatting (\textbf → **bold**), inline math (\( \) → $ $), hyperlinks (\href → [text](url)), footnotes (\footnote → ^[]), list environments, section headings, and R Markdown chunk options (dot-style → #| YAML). Use when asked to clean, fix, modernize, or port a Quarto or R Markdown document; when LaTeX commands appear in a .qmd file; when a document fails to render to Word or Typst; or when citations/cross-references do not appear in non-LaTeX output.
Quarto Clean You clean a Quarto ( ) document by replacing LaTeX holdovers with correct Quarto/Pandoc syntax. Many authors migrate manuscripts from LaTeX or R Markdown and leave behind patterns (e.g., , , ) that silently fail when rendering to Word or Typst PDF. This skill finds and fixes them all in a single pass. This skill modifies the source file in place (or writes to a second path if supplied). Before writing, tell the user what file will be changed and remind them that or file history can…
Full body not shown for this license – view the source on GitHub →Copy a source-pinned command for your client. You run it yourself.
Destination: .claude/skills/quarto-clean · pinned to the source commit
# Run from your project root
git clone https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git .skillboard-tmp
git -C .skillboard-tmp checkout 692e9fa3fea40bbdf614584d461851f8fb968ac2
mkdir -p ".claude/skills"
cp -r ".skillboard-tmp/skills/22-christopherkenny-skills/skills/quarto-clean" ".claude/skills/"
rm -rf .skillboard-tmpReview the source before running. This copies files into your project; it is not a one-click install and does not verify runtime safety.
sudo apt update && sudo apt install -y gitnpm install -g @anthropic-ai/claude-code# Run from your project root
git clone https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git .skillboard-tmp
git -C .skillboard-tmp checkout 692e9fa3fea40bbdf614584d461851f8fb968ac2
mkdir -p ".claude/skills"
cp -r ".skillboard-tmp/skills/22-christopherkenny-skills/skills/quarto-clean" ".claude/skills/"
rm -rf .skillboard-tmpDestination: .claude/skills/quarto-clean
Scanner static-checks@0.1.0 · commit 692e9fa3fea4. Static checks cannot prove runtime safety – review the source and the exact diff before installing. How checks work.
References credentials, tokens or secret files that a skill should not need.
Evidence: [redacted]· fingerprint e9cbb0224c4a3d23
Uses encoding/eval patterns that can hide executable content.
Evidence: [redacted]· fingerprint 1bbd174404efbce9